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Efficient Methods for Robust Classification Under Uncertainty in Kernel Matrices (pdf), (Resources).
---- Aharon Ben-Tal, Sahely Bhadra, Chiranjib Bhattacharyya, Arkadi Nemirovski; Journal of Machine Learning Research , 2012.
NETGEM: Network Embedded Temporal GEnerative Model for gene expression data (pdf).
---- Vinay Jethava; Chiranjib Bhattacharyya; Devdutt Dubhashi; Goutam N. Vemuri; BMC Bioinformatics , 2011.
A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data (pdf), (Resources).
---- Sahely Bhadra, Chiranjib Bhattacharyya, Nagasuma R Chandra and I Saira Mian. ; Algorithms for Molecular Biology. 4:5 , 2009.
Computational Protein Structure Analysis: Kernel and Spectral Methods (pdf).
---- Sourangshu Bhattacharya; PhD Thesis , 2009.
Structural Alignment based Kernels for Protein Structure Classification. (pdf).
---- Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R Chandra; International Conference on Machine Learning (ICML) , 2007.
Comparison of protein structures by growing neighborhood alignments. (pdf).
---- Sourangshu Bhattacharya, Chiranjib Bhattacharyya and Nagasuma R Chandra.; BMC Bioinformatics. 6;8:77. Mar, , 2007.
Projections for fast protein structure retrieval. (pdf).
---- Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R Chandra; BMC Bioinformatics , 2006.
Fast Algorithms for RNA Secondary Structure Prediction. (pdf).
---- Sanjay Vaghela; M.E. Thesis , 2006.
Simultaneous relevant feature identification and classification in high-dimensional spaces: Application to molecular profiling data.. (pdf).
---- C.Bhattacharyya, L. R. Grate, A. Rizki, D. Radisky, F. J. Molina, M. I. Jordan, M. J. Bissell, and I. S. Mian.; Signal Processing, 83, 729-743 , 2003.
Integrated analysis of transcript profiling and protein sequence data. (pdf).
---- L. R. Grate, C. Bhattacharyya, M. I. Jordan, and I. S. Mian.; Mechanisms of Ageing and Development, 124, 109-11 , 2003.